Pathogen Informatics, Wellcome Sanger Institute
- 160 followers
- Hinxton, Cambs., UK
- http://www.sanger.ac.uk/science/groups/pathogen-informatics
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Repositories
Showing 10 of 121 repositories
- assorted-sub-workflows Public
- gemsweep Public
Nextflow pipeline for deconvoluting mixed sample reads into bins with strain-level resolution.
- dlh-in-a-box-umbrella-helm-chart Public
An Open Source Data Lakehouse Umbrella Helm Chart, dependent on trino, prefect, minio, hive and datahub
- nextflowtool Public
- gps-pipeline-sanger Public Forked from GlobalPneumoSeq/gps-pipeline
Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
- mags_maker Public
Generate Metagenome-Assembled Genomes (MAGs) from short-read metagenomic sequencing data. A re-implementation of generate_mags.
- trepogeno Public
trepogeno is a molecular typing scheme and tool for classifying Treponema pallidum genomic data
- strain_mapper Public
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