BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
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Updated
Jan 29, 2024 - Jupyter Notebook
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
R interface for FDA Adverse Event Reporting System
Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.
Pharmaceutical R&D Pipeline Intelligence MCP Server — Clinical trials, FDA/EMA approvals, safety data. Questions? Start here!
Safety signal detection in pharmacological data (pharmacovigilance)
A domain-specific language for clinical decision support and biotech workflow automation
Query FDA data on drugs, food, devices, and recalls via openFDA. STDIO or Streamable HTTP.
AI-powered clinical decision support system detecting Look-Alike Sound-Alike (LASA) confusable drug names using NLP, speech recognition, and phonetic algorithms.
Code and Datasets for the paper "A Computational Framework for Identifying Age Risks in Drug-Adverse Event Pairs", published on AMIA 2022 Informatics Summit.
Drug Side Effect Checker - The Pharmacovigilance Dashboard Prototype build with FDA (FAERS) data
Intelligent Pharmacovigilance Signal Triage Orchestrator fusing openFDA/FAERS disproportionality, ChEMBL mechanisms, and PubMed literature. Features deterministic multi-source confidence gating, strict/lenient dual-metric evaluation, and an interactive zero-API Streamlit dashboard.
AI-powered pharmacogenomic risk prediction system. Analyzes patient VCF files across 6 genes (CYP2D6, CYP2C19, CYP2C9, SLCO1B1, TPMT, DPYD) to predict drug-specific risks with CPIC-aligned recommendations and Gemini AI explanations.
Open benchmark for adverse drug event signal detection on FDA FAERS: deduplicated, time-split data, independent SIDER labels, event-stratified AUC, and classical baselines (ROR, PRR, BCPNN, MGPS).
Hypergraph neural networks for drug–drug interaction prediction (PyTorch). HGNN + GCN/GAT/GraphSAGE/MLP baselines.
Drug safety and pharmacovigilance (PV) jobs in the US, UK and Europe: case processing, safety scientists, signal detection, device vigilance, from employers' own job boards. Rebuilt every Monday. Maintained by Litos.
Drug labels, adverse-event reports and recalls — as typed values, keyless, on any Apple platform
GLP-1临床试验风险预测系统
Pharmacovigilance signal detection dashboard using FDA FAERS data
Drug Interaction Cascade Analyzer — Detect dangerous multi-drug interactions using knowledge graph + CYP450 enzyme cascade analysis on real FDA data
Pharmacovigilance analysis of GLP-1 receptor agonist adverse events using FDA FAERS data with R.
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